Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., Type I secretion system, membrane fusion protein LapC from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  129 bits (325), Expect = 1e-34
 Identities = 111/424 (26%), Positives = 194/424 (45%), Gaps = 50/424 (11%)

Query: 48  RPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSI 107
           R P     +TALTL       L WA+W ++D    A G ++ S R+Q+IQS E   L  +
Sbjct: 18  RQPRQLMWITALTLG----CFLAWAHWAEIDEVTRAQGAVIASSRTQLIQSPEGGVLQEM 73

Query: 108 HVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTA 167
            V++G  VE    L  L+            ++A      L   R  L+ ++    P F A
Sbjct: 74  LVKEGDVVEPRQILAQLEKTRTQTAFLETRAKAA----SLSAARARLHAEVFGGMPSFPA 129

Query: 168 LPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLA 227
                   + EN LS  ++                  +AA   +  A++++T  + Q L 
Sbjct: 130 ELRRNYPDLVENQLSLLSK-----------------RRAALNEEADAIVKMTTLVQQELD 172

Query: 228 ARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQR 287
               L      G V       E+L  QRQ+A  ++++   +++Y            Q  +
Sbjct: 173 MNLPL---VASGDVS----RTEILRLQRQIADMKSQITNKRNKY-----------FQDSQ 214

Query: 288 EWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMI 347
             L K ++    L  + Q L++ R+  +   +R+PV G V+ + + TLG V++P + +M 
Sbjct: 215 AELSKVQE---DLLGVEQSLAQRRDALEQTELRAPVRGVVKNVRITTLGGVIRPGEEVMQ 271

Query: 348 IVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDE-Q 406
           IVP       E ++   D+ F+ PG    VK+DA+ YT YG +  +L  IS D+ T++ +
Sbjct: 272 IVPLEDDLLVEAKLRPADIAFIKPGLEARVKIDAYDYTIYGDLPGKLDFISADTLTEDLK 331

Query: 407 LGLVFPAQIQLKTNHIMIDGQ---TVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEA 463
            G     +++++T      G+   ++++ PGM+   E+ T ++ V+ YL  PI +  +E+
Sbjct: 332 QGEQPYYRMRVRTTGRQFSGRSQASLDILPGMTATVEVMTGRKTVLQYLTKPIVKTMSES 391

Query: 464 LRER 467
           L ER
Sbjct: 392 LAER 395