Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., HlyD family secretion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  273 bits (699), Expect = 7e-78
 Identities = 165/471 (35%), Positives = 263/471 (55%), Gaps = 10/471 (2%)

Query: 6   RAQTRGSL--RMNTIMKRFFGQKSPHQPTE---HHYEFLPAHLALAQRPPSPFARVTALT 60
           R Q  G L  R     +  +  ++  +P E   H  +FLPA L+L + P SP  RV    
Sbjct: 4   RLQALGDLLRRYGAAFRHAWRHRAELEPVERLPHEAQFLPAALSLQETPVSPAPRVAMWL 63

Query: 61  LSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAP 120
           L   ++  LLWA +G++DV ATA G++V + R++ IQS++ + + +IHV DGQRV+ G  
Sbjct: 64  LIGFMVLTLLWAVFGRMDVVATAQGKIVPNDRTKTIQSFDTASVKAIHVTDGQRVKAGDL 123

Query: 121 LLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPA---EQQALIH 177
           L+ LD      D  RLV +      ++ R + LL+      +P   A PA   + + L  
Sbjct: 124 LIELDATTTQADTDRLVGEQAVAVLQVARGKALLDALASGREPRL-ARPAGVDDARYLEA 182

Query: 178 ENYLSEKN-EFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVK 236
           +  L+ ++ E+ + L+ I A+         + Q  +  L Q      QR    K L    
Sbjct: 183 QRLLAGQHAEYSARLSRIVADTARREAELRSTQELVKKLEQTMPIAQQRAQDFKNLVAQN 242

Query: 237 VIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQA 296
            +    YLE+E+E +E +  +A QR+ L  +++    ++ +     A+ +R  L+   +A
Sbjct: 243 FVSRHGYLEREQERIEQEADLANQRSRLREIEATLREVQGQRQALMAETRRATLDSSTEA 302

Query: 297 RLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQ 356
           + +L +L QE  K   R +L  + SPVDGTVQQL V+T G V+  AQ LM+IVP +   +
Sbjct: 303 QQRLDALGQEWKKADSRGRLMRLTSPVDGTVQQLVVHTEGGVVTEAQPLMVIVPSDNPLE 362

Query: 357 AEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQ 416
            E    NKD+GFV  GQ   VK++ F YT+YGTIDA + S+S D+  DE+ GL++ ++++
Sbjct: 363 VEAFFENKDIGFVKAGQEAEVKIETFQYTKYGTIDAAVSSVSHDAINDEKRGLIYSSRVR 422

Query: 417 LKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           +    +M+DG  V L+PGM+V  E+KT +RRVI+Y L+P+ ++ +E+LRER
Sbjct: 423 MDKTTLMVDGTEVSLSPGMAVTVEVKTGQRRVIEYFLAPLLQHTSESLRER 473