Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., Type I secretion system, membrane fusion protein LapC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  140 bits (353), Expect = 8e-38
 Identities = 112/412 (27%), Positives = 192/412 (46%), Gaps = 47/412 (11%)

Query: 59  LTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKG 118
           L  SL  L   +WA++G+LD  +T  G+++ S R QV+QS +   L  + VR+G RV+  
Sbjct: 29  LICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQAN 88

Query: 119 APLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQALIHE 178
             +  LD   +  ++    ++         R    +ND  L       A PAE       
Sbjct: 89  QIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPL-------AFPAEL------ 135

Query: 179 NYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQVKVI 238
                 N +   +A+ T   K  R   A  ++++   L    ++++ LA  ++L +    
Sbjct: 136 ------NGWPDLIAAETRLYKSRRAQLADTEAELRDALA---SVNKELAITQRLEKSGAA 186

Query: 239 GHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARL 298
            HVE       +L  QRQ +    ++  L+SQY             + RE L K   A  
Sbjct: 187 SHVE-------VLRLQRQKSDLGLKITDLRSQYYV-----------QAREALSK---ANA 225

Query: 299 QLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAE 358
           ++  L+  L    +      +RSPV G V+ + V T+G V+ P   +M IVP +     E
Sbjct: 226 EVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIE 285

Query: 359 VQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLK 418
            ++  +D+ F++PGQ   VK+ A+ Y  YG +D  + +IS D+  D+    +F  ++ ++
Sbjct: 286 TRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIR 345

Query: 419 TNHIMI---DGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           T+   +    G+   + PGM    +IKT ++ ++DYL+ P    + EALRER
Sbjct: 346 THQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAK-EALRER 396