Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., Putative type-I secretion protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 84.7 bits (208), Expect = 5e-21
 Identities = 96/424 (22%), Positives = 185/424 (43%), Gaps = 36/424 (8%)

Query: 59  LTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKG 118
           + +SL +L  +L  Y+ +++      G +     +Q+I   +   +  I+V +G  V+KG
Sbjct: 3   IIISLTILIIIL-TYFIEINSVVHGQGVITTKDNAQLISLSKGGTIQDIYVAEGDTVKKG 61

Query: 119 APLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQ----LLTHDPMFTALPAEQQA 174
             L  +  L + ++  R  +Q  +   ++     +L+ +    L+T D   +    E +A
Sbjct: 62  ELLAKVVNLDLQKEYQRYRTQKGYLDKDVNEISFILDKENESGLITLDGTRSLSNKEVKA 121

Query: 175 ---LIHENYLSE---KNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAA 228
              L+H    ++   K   DS ++ +  ++       A    +I+ L  L +        
Sbjct: 122 NIELVHSQIRAKELKKTSLDSEISGLQEKLSSKEKELALLAEEINILSPLVKKGISPYTN 181

Query: 229 RKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQRE 288
                Q        Y++ + E+ + +  +  ++ ++E++ +  E+L   L        R 
Sbjct: 182 FLNKKQA-------YIKVKSEINDIESSITLKKDDIELVVNDIEALNNEL--------RL 226

Query: 289 WLEKRRQARLQ-LASLNQELSKVREREQLEIIRSPVDGTVQQL--SVYTLGAVLQPAQNL 345
            L K     LQ L  +N  L  + ++   E I SPVDG + ++  S  T G V+Q A  L
Sbjct: 227 SLSKIISKNLQELEVVNSTLKVIEKQINEEDIYSPVDGVIYKINKSATTHGGVIQAADLL 286

Query: 346 MIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDE 405
             I P+ R   A+V+IL K    +Y  ++V + V +    +  + +A + +IS DS  + 
Sbjct: 287 FEIKPKVRTMLADVKILPKYRDQIYVDEAVKLDVQSIIQPKIKSYNATIDNISPDSYEEN 346

Query: 406 QLGLV---FPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAE 462
             G +   +   I    N    +     L PGM+V A + T K  +++YLLSP+ +   +
Sbjct: 347 TGGTIQRYYKVIIAFDVN----EDDLRWLKPGMTVDASVITGKHSIMEYLLSPLMKGVDK 402

Query: 463 ALRE 466
           A  E
Sbjct: 403 AFSE 406