Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Multidrug resistance efflux pump from Enterobacter asburiae PDN3

 Score =  132 bits (331), Expect = 3e-35
 Identities = 106/416 (25%), Positives = 183/416 (43%), Gaps = 48/416 (11%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           R+   +L + V+  + WA++G LD  +T +G+++ S R QV+QS +   L  ++V +G +
Sbjct: 29  RIVIFSLLMFVVLGV-WAWFGVLDEVSTGSGKVIPSSREQVLQSLDGGILTELNVHEGDQ 87

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQA 174
           V+ G  L  LD      ++    ++         R    +ND  L   P     P     
Sbjct: 88  VQAGQVLARLDPTRSESNVGESAARYRASLASSARLYAEVNDLPLKFPPSLAKWP----- 142

Query: 175 LIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQ 234
                           +A  T      R      Q ++ A L L    ++ LA  ++L +
Sbjct: 143 --------------DLMADETRLYNSRRAQLEDTQRELRAALDLA---NKELAITQRLVK 185

Query: 235 VKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRR 294
                HVE L                      L+ Q   LE +LT  ++Q   +  E   
Sbjct: 186 TGAASHVEVLR---------------------LQRQKSDLELKLTDVRSQYYVQAREALS 224

Query: 295 QARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRV 354
           +A  ++  ++  L   ++      ++SPV G V+ + V T+G V+ P   LM IVP +  
Sbjct: 225 KANAEVDMVSAILKGRQDSVTRLTVKSPVRGIVKNIKVTTIGGVIPPNGELMEIVPVDDH 284

Query: 355 QQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQ 414
              E ++  +D+ F++P Q   VK+ A+ Y  YG +   + +IS D+  DE    VF  +
Sbjct: 285 LLIETRLSPRDIAFIHPNQEALVKITAYDYAIYGGLHGVVETISPDTIQDEAKPEVFYYR 344

Query: 415 IQLKTNH---IMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           + ++T+    +   G+   + PGM    +IKT ++ V+DYL+ P    + EALRER
Sbjct: 345 VFIRTSQDYLVNKAGRHFSIVPGMIATVDIKTGEKTVLDYLIKPFNRAK-EALRER 399