Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., hemolysin D from Escherichia coli ECRC100

 Score =  139 bits (351), Expect = 1e-37
 Identities = 123/423 (29%), Positives = 189/423 (44%), Gaps = 65/423 (15%)

Query: 55  RVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQR 114
           RVTA+ L    L  L WA++ +LD   T +G +  SGR QV+QS E   L  + V+ G  
Sbjct: 24  RVTAVML----LCFLGWAWYFQLDEVTTGSGTVEPSGREQVVQSLEGGILYHLDVKVGDI 79

Query: 115 VEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQA 174
           VE+G PL  L+      D+   +S+         R R  ++++ L               
Sbjct: 80  VEQGQPLAQLNRTKTESDVQEAMSRLYAALATSARLRAEVSNKPLV-------------- 125

Query: 175 LIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKKLNQ 234
                +  E N+F   + S TA   +  T +         L Q    +++ LA  + L +
Sbjct: 126 -----FPDELNKFPELIESETA---LYNTRRDGLNKATTGLTQGISLVNRELAMTQPLVK 177

Query: 235 VKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRR 294
                 VE L  +++  E + +++  R +  V                            
Sbjct: 178 QGAASSVEVLRLQRQANELENKLSDVRTQYYV---------------------------- 209

Query: 295 QARLQLASLNQEL----SKVREREQLEI---IRSPVDGTVQQLSVYTLGAVLQPAQNLMI 347
           QAR +LA  N E+    S +R RE         +PV G VQ + V T+G V+ P   LM 
Sbjct: 210 QAREELAKANAEVETQRSVIRGREDSLTRLNFTAPVRGIVQDIDVTTVGGVIAPGGKLMT 269

Query: 348 IVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQL 407
           IVP +     E +I  +DV F++PGQ   VK+ A+ Y+ YG +  E+  IS D+  DE  
Sbjct: 270 IVPLDEQLLIEAKISPRDVAFIHPGQKSLVKITAYDYSIYGGLPGEVAVISPDTVQDEVR 329

Query: 408 GLVFPAQIQLKT--NHIMIDG-QTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEAL 464
             V+  ++ ++T  NH+     Q   + PGM    +I+T K+ V+DYLL P  + Q EAL
Sbjct: 330 RDVYYYRVYIRTFSNHLENKSKQQFPIFPGMVATVDIRTGKKSVLDYLLKPFNKAQ-EAL 388

Query: 465 RER 467
           RER
Sbjct: 389 RER 391