Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., Colicin V secretion protein CvaA from Alteromonas macleodii MIT1002

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 100/421 (23%), Positives = 197/421 (46%), Gaps = 50/421 (11%)

Query: 50  PSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVS-GRSQVIQSYEQSRLLSIH 108
           P P     A  L + +LA +++   G    +A+ +G L  S G  ++     + ++L + 
Sbjct: 26  PKPVYSAIAGLLVVWILAVIIYLNTGSYARKASVSGWLEPSHGVFKLYADARRGKVLDVL 85

Query: 109 VRDGQRVEKGAPLLTL----DTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPM 164
           V +GQ V KGAPL+ +    D    N+  T+L+++ E +     ++RT  + Q L     
Sbjct: 86  VSEGQLVSKGAPLIKINYSSDDASGNKVSTQLLAELEAK-----QHRTRQSIQRLD---- 136

Query: 165 FTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQ 224
                A++Q L  E  LS+       L ++ A +++++T  A       AL Q  +  +Q
Sbjct: 137 -VLHRAQRQGL--EEQLSQAKR---ALTALDAIVELSQTQWAL------ALKQWEK--AQ 182

Query: 225 RLAARKKLNQVKVIGH-VEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKA 283
            L  +  ++Q     H ++ L  E++L  AQ+    ++A +  L  +  +L ++     A
Sbjct: 183 TLLNQGHISQADYENHTLQRLTAEQQLTLAQKDQNDEKANIAALHHELATLPQQQANEMA 242

Query: 284 QKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQ 343
             +             L+ L Q++   +   + E I +P +G +  L V   G  +  ++
Sbjct: 243 NVENT-----------LSDLTQQIVSHKSNAE-ETIYAPHNGVISGLQVKA-GYTIDSSR 289

Query: 344 NLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRD--- 400
            L+ ++P+N   QA + +  +  GF+  GQ++ ++ DAFPY ++G    E+++IS     
Sbjct: 290 PLLTLLPKNADIQARIAVPVRSAGFLRKGQALHIRYDAFPYQKFGVQSGEIVNISPSLVL 349

Query: 401 --STTDEQLGLVFPAQI---QLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSP 455
               TD  + +  PA +    L T  I+  G  + L  GM+  A++   +R ++++L+ P
Sbjct: 350 PGELTDIPISISEPAYLVTATLNTKEILAYGNNISLKAGMTFSADVDLSQRTLMEWLMEP 409

Query: 456 I 456
           +
Sbjct: 410 L 410