Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 112/447 (25%), Positives = 184/447 (41%), Gaps = 67/447 (14%)

Query: 59  LTLSLGVLAALL-----WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQ 113
           L   L   AALL     WA    L     A+G LVV   ++ +Q  +   +  I V +G+
Sbjct: 18  LLAGLAAGAALLAGVGGWAATTNLAGAVVASGHLVVDSYTKKVQHPKGGVVGEILVNEGE 77

Query: 114 RVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPMFTALPAEQQ 173
           RV+ G  ++ LD                 QT   +   T   D+L        A   +  
Sbjct: 78  RVKAGDVVMRLDAT---------------QTRANLAIVTKRLDELGARMARLEAERDDLA 122

Query: 174 ALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQ--RLAARKK 231
            LI    L  + +     +++ +E K+    ++ R+       QL E I+Q        K
Sbjct: 123 ELIFPQALIARRDDPDVASAMRSETKLFEFRKSYREG---RKAQLAERITQFEHEIEGLK 179

Query: 232 LNQVKVIGHVEYLEQE---KELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQRE 288
             +V     +  LE E   ++ L  Q  V+ QR  L  L++Q  +      G K   Q +
Sbjct: 180 AQEVAYDNGLAVLEAEITSQKSLREQGVVSVQR--LNSLQTQAATFGGE-RGEKIAYQAQ 236

Query: 289 WLEKRRQARLQLASLNQELSKVREREQLEI----------------------IRSPVDGT 326
              +  + +LQ+  ++QEL     RE  EI                      I +P  G 
Sbjct: 237 TAGRITETKLQILQIDQELRTEVGRELREIQAQMGEFVERKVAAEDELKRIDIVAPQSGM 296

Query: 327 VQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTR 386
           V +++V+T+G V+ PA  +M+IVP+      EVQI+ KD+  +  GQ   +++ AF    
Sbjct: 297 VHEMAVHTVGGVVTPADPIMLIVPDGDELALEVQIVPKDIDQLQVGQKAMLRMTAFNQRV 356

Query: 387 YGTIDAELLSISRDSTTDEQLGLVF-------PAQIQLKTNHIMIDGQTVELTPGMSVVA 439
              ++  +  I+ D TTD++ GL +       P   + K N+         L PGM   A
Sbjct: 357 TPELEGHVSRIAADITTDQRTGLSYYLARISVPVSEREKLNN-------APLVPGMPAEA 409

Query: 440 EIKTDKRRVIDYLLSPIQEYQAEALRE 466
            I+T +R  + Y+  P+ +  + A RE
Sbjct: 410 FIQTSERTALSYIAKPLTDQISRAFRE 436