Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1740 a.a., PAS domain S-box protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  239 bits (610), Expect = 7e-67
 Identities = 153/390 (39%), Positives = 226/390 (57%), Gaps = 19/390 (4%)

Query: 198  LRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGELTS-YQVELLEQMENSA 256
            L  A++ AE   + K+ FLA MSHELRTP+N ++G+ID+L    T   Q E ++ +  S+
Sbjct: 1222 LLTAKEEAENLLKVKTQFLANMSHELRTPMNGIIGMIDLLSQINTDPEQSEYIDTLRKSS 1281

Query: 257  ELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQ--SLVYHRQIAQDKGVHFYVQSNK 314
            + LL I+NDILDLS+I++G   LH   +DL + LD+  SL  +R  AQ K + F    + 
Sbjct: 1282 DALLAILNDILDLSKIQAGKLVLHESGVDLHETLDKIHSLFVNR--AQQKDLTFTYAIDP 1339

Query: 315  NPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDV-----VLDYTKDGVVFRVKDTGIGI 369
            N      TD  RL Q+L N+  NAIKFT  G+V +      LD     +  RVKD+GIGI
Sbjct: 1340 NVPRHVVTDETRLLQVLSNLTSNAIKFTNAGEVSIHVGAEQLDRKHFRLHVRVKDSGIGI 1399

Query: 370  EKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT--FTL 427
                 E LF  F Q DNS T+ +GGTGLGLAI++ L  L+GG I VES  G G+   F +
Sbjct: 1400 SPEGQELLFNDFTQLDNSSTKTFGGTGLGLAISRQLTHLLGGDIGVESIPGDGSVFWFNI 1459

Query: 428  YIPLQSRLKNIKPSTSSSQQIVNVKN----HHILVVEDTKTNQMVIQLLLNKLGYDVTIA 483
             + L S L+  +      QQ+  V++     ++L+V+D + NQ V Q  L +LG    IA
Sbjct: 1460 KVRLASTLEVEQQQLRQQQQLQEVESLTYTPYVLLVDDNQINQKVAQKQLERLGCITEIA 1519

Query: 484  ENGLQAVELLEKNHVFDLVLMDISMPIMDGIAATKILRDKHIEI--PIIALTAHTAGSDK 541
             NG +A+E       ++++ MDI MP MDG+ ATK ++++      PI+A+TA++   D 
Sbjct: 1520 SNGYEAIERATTKK-YNIIFMDIQMPEMDGVTATKHIKEQLGSACPPIVAMTAYSMKDDA 1578

Query: 542  QNCIDAGMNDIVLKPIRSKDIMEVVKRFLN 571
               +  GM+D V KP++S D+  ++ ++ N
Sbjct: 1579 AKFMGQGMDDYVSKPVKSSDLHAMISKWEN 1608