Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 995 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  230 bits (586), Expect = 2e-64
 Identities = 146/396 (36%), Positives = 221/396 (55%), Gaps = 25/396 (6%)

Query: 197 ELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDI-LRGELTSYQVELLEQMENS 255
           +LR ++ +AE AN++KS FLA MSHE+RTP+N ++G+  + L GEL + Q   ++ ++ S
Sbjct: 451 QLRESKSVAEAANKAKSLFLANMSHEIRTPMNGIIGMAHLALGGELPAKQRHHIQSIKQS 510

Query: 256 AELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGVHFYVQSNKN 315
           A+ LL IINDILDLS+ E+G   +     DL   +D+++      A +K +   V+    
Sbjct: 511 AQRLLGIINDILDLSKAEAGKVVIDAAPFDLANLIDEAISVVAAQASEKRLPINVRIASE 570

Query: 316 PTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDG--------VVFRVKDTGI 367
                  D  R+ QIL N + NA+KFT  G +DV  D   +G        + F V DTG 
Sbjct: 571 VPRGVIGDPLRIRQILLNYLSNAVKFTSSGGIDV--DVQIEGGKTAPPTKLRFAVSDTGC 628

Query: 368 GIEKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFTL 427
           G+   +   LF  F QA+ S +  +GGTGLGLAI + L ELMGG   VES++G G+TF  
Sbjct: 629 GLTPEQQATLFQSFQQAEASTSAKFGGTGLGLAIARQLAELMGGQAGVESQYGSGSTFWF 688

Query: 428 YIPLQSRLKNIK-PSTSSS----------QQIVNVKNHHILVVEDTKTNQMVIQLLLNKL 476
            +  Q  +  +  PS   S          Q    ++   +L+ ED  TNQMV   LL   
Sbjct: 689 TVQFQGAVDGVDCPSKFLSPIKIHNNFAHQDHSILQGAQVLLAEDDLTNQMVAVGLLEAA 748

Query: 477 GYDVTIAENGLQAVELLEKNHVFDLVLMDISMPIMDGIAATKILRD--KHIEIPIIALTA 534
           G  V +  NG  AVE       +++VLMD+ MP MDGI AT+++R+  + +++PI+A+TA
Sbjct: 749 GMLVDVVGNGAAAVEKAASGK-YEIVLMDVRMPGMDGITATRLIRENVELLDLPIVAMTA 807

Query: 535 HTAGSDKQNCIDAGMNDIVLKPIRSKDIMEVVKRFL 570
           +     K  C+ AGM+D V KP + + +  V++ ++
Sbjct: 808 NAMNEHKDECLAAGMSDFVSKPFQPEQLYGVIQNWV 843