Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  202 bits (514), Expect = 7e-56
 Identities = 136/386 (35%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 198 LRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDI-LRGELTSYQVELLEQMENSA 256
           L  A   AE A+Q+K++FLA MSHE+RTP+NA++G+  + L+ EL   Q + + +++ S 
Sbjct: 599 LHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSG 658

Query: 257 ELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQ--SLVYHRQIAQDKGVHFYVQSNK 314
           + LL IINDILD S+IE+G  S+    + L+  LD   +L+  + IA  KG+        
Sbjct: 659 QHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIA--KGLELIFDVAS 716

Query: 315 NPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKD-----GVVFRVKDTGIGI 369
           +   +   D  RL QIL N   NA+KFT+ G++ V +   +D      + F V+DTGIG+
Sbjct: 717 DVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDTGIGL 776

Query: 370 EKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFTLYI 429
              ++ +LF  F QAD S TR YGGTGLGLAI++ L ELM G + VES+ G G+TF    
Sbjct: 777 SAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFW--- 833

Query: 430 PLQSRLKNIKPSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQA 489
              + L   +P  +   +  +++  H+LVV+D +  + V+  +L  + + V   E+G  A
Sbjct: 834 -FTACLGKGRPRRALVPK-PDLRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAA 891

Query: 490 VELLEK---NHVFDLVLMDISMPIMDGIAATKILRDKHIEIP--IIALTAHTAGSDKQNC 544
           V  + +      F++V +D  MP MDGI   + +    +  P  +I +TAH      +  
Sbjct: 892 VARVREVAGAKPFEVVFLDWQMPGMDGIETARAILGLGLTSPPHMIMVTAHGREEVMKAA 951

Query: 545 IDAGMNDIVLKPIRSKDIMEVVKRFL 570
             AG+ D+++KP+    + + V R L
Sbjct: 952 ESAGIEDVLIKPVNPSIMFDAVMRAL 977



 Score = 85.9 bits (211), Expect = 9e-21
 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 444  SSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDLVL 503
            S   + +++   +L+ ED   NQ V   LL   G +V +AENG  AV+++     +D+VL
Sbjct: 995  SDDALASLRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMAAP-YDMVL 1053

Query: 504  MDISMPIMDGIAATKILRDKHI-EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPI 557
            MD+ MP+MDG+AAT+ +R     ++P+IA+TA+   +D+  C  AGMND + KPI
Sbjct: 1054 MDMQMPVMDGVAATREIRRLGFGDLPVIAMTANAMQADRDRCAAAGMNDYLTKPI 1108