Pairwise Alignments

Query, 572 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  214 bits (546), Expect = 2e-59
 Identities = 139/388 (35%), Positives = 227/388 (58%), Gaps = 26/388 (6%)

Query: 198  LRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDI-LRGELTSYQVELLEQMENSA 256
            L  A++LAE A + KS+FLA MSHE+RTP+NA++G+  + L+ ELT  Q + +++++++ 
Sbjct: 872  LTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVKKIQSAG 931

Query: 257  ELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQ--SLVYHRQIAQDKGVHFYVQSNK 314
            + LL IINDILD S+IE+G  ++     +L+K LD   +L+  +  A+   + F + S  
Sbjct: 932  QHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEV 991

Query: 315  NPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVL-----DYTKDGVVFRVKDTGIGI 369
              TL    DS RL QIL N   NA+KFT+ G++D++        T+  + F V+DTGIGI
Sbjct: 992  PRTL--VGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTGIGI 1049

Query: 370  EKNRVEQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTTFTLYI 429
               +  +LF  F QAD S TR +GGTGLGLAI+K L ELMGG + VESE+G G+TF    
Sbjct: 1050 TAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFTA 1109

Query: 430  PL---QSRLKNIKPSTSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENG 486
             +     R + + PS        +++   +LVV+D    + V+  L+  + + VT   +G
Sbjct: 1110 RMGIGTVRKRRLLPSP-------DLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASG 1162

Query: 487  LQAVELLEKNHV----FDLVLMDISMPIMDGIAATKILRDKHIEIP--IIALTAHTAGSD 540
            L+AV+ +++  +    +++VL+D  MP MDGI     L    ++    ++ +TA+     
Sbjct: 1163 LEAVDEVKRAAMAGTPYEIVLLDWRMPGMDGIETAHHLMALGLDPAPRLLMVTAYGREEV 1222

Query: 541  KQNCIDAGMNDIVLKPIRSKDIMEVVKR 568
                 +AG+ D+++KP+ +  + + + R
Sbjct: 1223 LNLITEAGIEDVLIKPVSASILFDTIMR 1250



 Score = 99.8 bits (247), Expect = 8e-25
 Identities = 50/133 (37%), Positives = 81/133 (60%), Gaps = 3/133 (2%)

Query: 442  TSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKNHVFDL 501
            +SS   +  ++   IL+VED   NQ V   LL   G+ V +A++G  A+  + +N  +D+
Sbjct: 1267 SSSEMHLETIRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRN-AYDM 1325

Query: 502  VLMDISMPIMDGIAATKILR--DKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRS 559
            VLMD+ MP+MDG+AAT+ +R   +   +PI+A+TA+    D+  C+DAGMND + KPI  
Sbjct: 1326 VLMDMQMPVMDGVAATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDP 1385

Query: 560  KDIMEVVKRFLNP 572
              +   + R++ P
Sbjct: 1386 DQLWAALLRWIAP 1398