Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., cytochrome Cbb3 from Pseudomonas simiae WCS417

 Score =  262 bits (670), Expect = 7e-75
 Identities = 148/334 (44%), Positives = 198/334 (59%), Gaps = 21/334 (6%)

Query: 1   MTTFWSLWIIVITVGTLLGCAILLVWCLKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTY 60
           MTTFWSL++ V+++GT+     LL+   K +   +    +GH +DGI E +NPLPKWW  
Sbjct: 1   MTTFWSLYVTVLSLGTIFALTWLLLSTRKGQRAEQTDETVGHSFDGIEEYDNPLPKWWFM 60

Query: 61  LFIGTFIFAAIYLTLYPGLGSFKGIL-GWQSSDQTVRSLEESRASIAAAQQNKQLV-QYS 118
           LF+GT IFA  YL LYPGLG++KG+L G+   D       + +   A  Q     V ++ 
Sbjct: 61  LFVGTIIFALGYLALYPGLGNWKGLLPGYSYLDN------DKQTPFANGQTGWTGVHEWE 114

Query: 119 KELDDAEAYYGEAFKRLAYQDGTTNLREIPDIAADSDALKVGQRLFLQNCSQCHGSDARG 178
           KE+  ++A +G  F + A          I ++A D  ALK+G RLF  NCS CHGSDA+G
Sbjct: 115 KEMAKSDAKFGPIFAKFASMP-------IEEVAKDPQALKMGGRLFASNCSVCHGSDAKG 167

Query: 179 QKGFPNLTDDAWLYGGEPQAIVTTIRHGRIGQMPAWKDILGEQGVKEVVSYTL-SLSGR- 236
             GFPNLTD  W +GGEP  I  TI  GR   MPAW DIL EQGV +V ++ + +L GR 
Sbjct: 168 AYGFPNLTDADWRWGGEPATIKETIMKGRHAVMPAWLDILKEQGVSDVAAFVVTNLDGRK 227

Query: 237 ---SVNAKEAEAGKARFAVCSACHGTDGKGNPAFGAPNLT-DNDWLFGDSRAEVTETVMN 292
               V A  A   K   A C ACHG  GKG PA GAP+LT    +++G S A++ +T+  
Sbjct: 228 LPEGVKADVANGEKLFAANCVACHGPAGKGTPAMGAPDLTHPGAFIYGSSFAQLQQTIRW 287

Query: 293 GRSGVMPAWINTLGEEKIQLVAAYVWSLSNSENK 326
           GR G MPA     G +K+ L+AAYV+SLS+ + K
Sbjct: 288 GRQGQMPAQEQLQGNDKVHLLAAYVYSLSHGDKK 321



 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 142 TNL--REIPD-IAADSDALKVGQRLFLQNCSQCHGSDARGQK--GFPNLTDD-AWLYGGE 195
           TNL  R++P+ + AD   +  G++LF  NC  CHG   +G    G P+LT   A++YG  
Sbjct: 221 TNLDGRKLPEGVKAD---VANGEKLFAANCVACHGPAGKGTPAMGAPDLTHPGAFIYGSS 277

Query: 196 PQAIVTTIRHGRIGQMPAWKDILGEQGVKEVVSYTLSLSGRSVNAKE 242
              +  TIR GR GQMPA + + G   V  + +Y  SLS     A+E
Sbjct: 278 FAQLQQTIRWGRQGQMPAQEQLQGNDKVHLLAAYVYSLSHGDKKAEE 324