Pairwise Alignments

Query, 326 a.a., cytochrome-c oxidase, cbb3-type subunit III from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP from Caulobacter crescentus NA1000 Δfur

 Score =  188 bits (477), Expect = 2e-52
 Identities = 117/308 (37%), Positives = 158/308 (51%), Gaps = 46/308 (14%)

Query: 28  LKDKMGVEEGVDMGHEYDGIRELNNPLPKWWTYLFIGTFIFAAIYLTL---YPGLGSF-K 83
           + D  GVE     GHE+DGIREL+NPLP+WW +++  T  F+  Y  L   +PGL  + K
Sbjct: 6   IDDATGVET---TGHEWDGIRELDNPLPRWWLWIWYATIAFSIGYWVLMPAWPGLNGYTK 62

Query: 84  GILGWQSSDQTVRSLEESRASIAAAQQNKQLVQYSKELDDAEAYYGEAFKRLAYQDGTTN 143
           G+L            +  RA +             +EL   EA+ GE    L     T +
Sbjct: 63  GLLN-----------KSDRAEVG------------QELKALEAHRGEGAAMLR----TAS 95

Query: 144 LREIP-DIAADSDALKVGQRLFLQNCSQCHGSDARGQKGFPNLTDDAWLYGGEPQAIVTT 202
           L +I  D    + A +VGQ +F  NC+ CHG    G KG+ NL DD WL+GG+ + I  T
Sbjct: 96  LEQIEKDPKLQAYAQQVGQSVFGDNCATCHGIGGTGSKGYANLRDDVWLWGGKLEDIQYT 155

Query: 203 IRHG--------RIGQMPAW--KDILGEQGVKEVVSYTLSLSGRSVNAKEAEAGKARF-A 251
           I HG        R+ QMPA+   ++L  + + ++  Y ++LS R  NA         F A
Sbjct: 156 ITHGIRSGAEGARVSQMPAYGRDEMLKPEQIDDLTEYVVNLSRRPANAAAVARATPLFEA 215

Query: 252 VCSACHGTDGKGNPAFGAPNLTDNDWLFGDSRAEVTETVMNGRSGVMPAWINTLGEEKIQ 311
            CSACHG  G+GN   GAPNLTD DWLFG  RA +   +  G  GVMPAW   L  E I+
Sbjct: 216 QCSACHGPQGQGNQQLGAPNLTDADWLFGADRASIRGQIYAGNGGVMPAWSGRLSPETIK 275

Query: 312 LVAAYVWS 319
            +  Y+ S
Sbjct: 276 ALTVYIHS 283



 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 152 ADSDALKVGQRLFLQNCSQCHGSDARG--QKGFPNLTDDAWLYGGEPQAIVTTIRHGRIG 209
           A++ A+     LF   CS CHG   +G  Q G PNLTD  WL+G +  +I   I  G  G
Sbjct: 201 ANAAAVARATPLFEAQCSACHGPQGQGNQQLGAPNLTDADWLFGADRASIRGQIYAGNGG 260

Query: 210 QMPAWKDILGEQGVKEVVSYTLSLSG 235
            MPAW   L  + +K +  Y  S +G
Sbjct: 261 VMPAWSGRLSPETIKALTVYIHSNAG 286