Pairwise Alignments

Query, 790 a.a., copper-translocating P-type ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 834 a.a., copper-exporting P-type ATPase CopA from Escherichia coli ECRC101

 Score =  348 bits (892), Expect = e-100
 Identities = 253/838 (30%), Positives = 425/838 (50%), Gaps = 76/838 (9%)

Query: 4   TCYHCGEDVPAGTNFHVDILGEQRDMCCP--------GCQTVAQTIVDSGL-VSYYQFRT 54
           +C HC + V        D+  EQ D+             + + +TI  +G   S    + 
Sbjct: 13  SCGHCVKRVKESLEQRPDV--EQADVSITEAHVTGTASAEQLIETIKQAGYDASVSHPKA 70

Query: 55  APAEKVELVPEQLKALIHYDNSDVQAEFVRSKDDHSEVTLSLDGVSCAACAWLIEKQLHT 114
            P  +  +  E L A+        +A    + DD     L L G+SCA+C   ++  L +
Sbjct: 71  KPLAESSIPSEALTAVS-------EALPAATADDDDSQQLLLSGMSCASCVTRVQNALQS 123

Query: 115 EPGVVSIRVNTTTNRALLSWDRTKTQLSHVLAQIHKLGYKAAPFEAD--KHEAQYHDA-- 170
            PGV   RVN     AL+    +   L   +  + K GY A   E D  + E Q   A  
Sbjct: 124 VPGVTQARVNLAERTALVMGSASPQDL---VQAVEKAGYGAEAIEDDAKRRERQQETAVA 180

Query: 171 -MKTYLYRLGIAGLASMQVMMLAVALYLEAFGD---LDAEFKNYFRWVSLIFATPVLLYS 226
            MK + ++  +A    + VM+  +       GD   + A+ ++ +  + LI    V++++
Sbjct: 181 TMKRFRWQAIVALAVGIPVMVWGM------IGDNMMVTADNRSLWLVIGLI-TLAVMVFA 233

Query: 227 ALPFYLNAWRSIRGRTLGMDVPVSLALIFAYIASLVATI------TEQGEVFFESISMFT 280
              FY +AW+S+      MD  V+L    A++ S+   +       E   +++E+ +M  
Sbjct: 234 GGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQWFPMEARHLYYEASAMII 293

Query: 281 FFLLVGRFLEMRARRKAAAASGNLLKLIPAIA--TTLDGQQ-VPVKTLKPGDCVRVLPGE 337
             + +G  LE RAR++++ A   LL L P  A   T +G++ VP+  ++PG  +R+  G+
Sbjct: 294 GLINLGHMLEARARQRSSKALEKLLDLTPPTARLVTDEGEKSVPLAEVQPGMLLRLTTGD 353

Query: 338 HIPADGEIINNRVHIDESMLTGESLPVVKATGDHVFAGTLNGDESFDLRVTASKADSVIS 397
            +P DGEI      +DE+MLTGE +P  K  GD V AGT+  D S   R +A  + + +S
Sbjct: 354 RVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLS 413

Query: 398 NIVRLQDDAQSSKPKIAEIADIVARYFVAIILVIA---AGTWFFWHQVRPEDAFWIML-- 452
            I+R+   AQSSKP+I ++AD ++  FV +++VIA   A  W+F+    P+  + +++  
Sbjct: 414 RIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPA-PQIVYTLVIAT 472

Query: 453 SVLVATCPCALSLATPTALTCATSSMGSVGVMLRKNHVFETLCKVNHLVIDKTGTLTHGN 512
           +VL+  CPCAL LATP ++          GV++R     +    ++ +V DKTGTLT G 
Sbjct: 473 TVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTVVFDKTGTLTEGK 532

Query: 513 IEISTVETLDSLTKESCLAIAAELESHANHPIAKAFRPYKAENVTVSEV---RNIIGSGM 569
            ++  V+T     +   L +AA LE  ++HP+A+A    KA ++ + +V   R + G G+
Sbjct: 533 PQVVAVKTFADFDEAQALRLAAALEQGSSHPLARAILD-KASDMQLPQVNGFRTLRGLGV 591

Query: 570 EGVFAGQKVKIGSAEFVLGNPLDS-------------AHNCVFLSLDGRHVATFHYRDPI 616
            G   G  + +G+   +    +D+                 V L++DG+ VA    RDP+
Sbjct: 592 SGEAEGHALLLGNQALLNDQQVDTKAIEADISAQASQGATPVLLAVDGKAVALLAVRDPL 651

Query: 617 RKEAKAFIEKFHAAGIKITLLTGDSQTNAQSVANEMQIDKVVAQAKPEDKLTYLREL-NK 675
           R ++ A +++ H AG ++ +LTGD+ T A ++A E  ID+V+A   P+ K   ++ L ++
Sbjct: 652 RSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSE 711

Query: 676 TDVTMMVGDGINDAPTLAGAHISVAMGGGTDVAKASADMVLIGDRLDKLLEARELALKTR 735
                MVGDGINDAP LA A + +AMGGG+DVA  +A + L+   L  + +A  ++  T 
Sbjct: 712 GRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATL 771

Query: 736 KIIRENLAWSLGYNLLILPLA-------VAGLVAPYIAVVGMSGSSIIVVTNSLRLLK 786
           + +++NL  +  YN + +P+A          L+ P +A   M+ SSI VV+N+ RLL+
Sbjct: 772 RNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLR 829



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 92  VTLSLDGVSCAACAWLIEKQLHTEPGVVSIRVNTT 126
           + L+LDG+SC  C   +++ L   P V    V+ T
Sbjct: 5   IDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT 39