Pairwise Alignments

Query, 377 a.a., spermidine/putrescine ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Spermidine/putrescine import ATP-binding protein PotA from Xanthobacter sp. DMC5

 Score =  275 bits (703), Expect = 2e-78
 Identities = 153/317 (48%), Positives = 209/317 (65%), Gaps = 7/317 (2%)

Query: 18  IRLSGISKSFDGKEIIGNLNLDVNHGEFLTILGPSGCGKTTVLRMIAGFETADQGQILLD 77
           +++ G++K F     +    L +  GEF+T+LGPSGCGKTT+L +IAGF  AD G+I + 
Sbjct: 30  VQIDGVTKRFGDATALHEAWLKIADGEFMTLLGPSGCGKTTLLNLIAGFLEADGGEIFVG 89

Query: 78  DQDVTQVPAEQRHVNTVFQSYALFPHMTVFENVAFGLRMQKVPQSEIEPRVMEALRMVRL 137
            + +T+     R +  VFQ+YALFPHM V +NV +GLRM+ V +SEIE RV EAL +V+L
Sbjct: 90  GRLMTETAPYDREIGVVFQNYALFPHMNVAKNVGYGLRMRGVAKSEIETRVAEALALVKL 149

Query: 138 AEMAQRKPHQLSGGQQQRIAIARAVVNKPKVLLLDESLSALDYKLRKQMQSELKQLQRQL 197
               +RKP QLSGGQQQR+A+ARA+V +PKVLLLDE  SALD  LR  MQ ELK++QR+L
Sbjct: 150 DGFGERKPRQLSGGQQQRVALARALVIRPKVLLLDEPFSALDKNLRGAMQVELKEIQRRL 209

Query: 198 GITFIFVTHDQEEALSMSDRIIVMRSGKIEQDGSPREIYEDPKNLFVARFIGEINVFQAT 257
           G+T IFVTHDQ EALSMSDRI VM  G+I Q G+P EIY  P + FVA F+G++NV    
Sbjct: 210 GVTTIFVTHDQSEALSMSDRIAVMSQGRIRQVGTPDEIYRRPLDPFVASFVGDVNVLPGR 269

Query: 258 TIDRIDEKRIRVDIEGIESIVYYEDE-VKAGDKLQVLLRPEDLRIEEIKESEEKGIV-GH 315
              RI E    +  EG  S+     E +  G  + + +RP+ +RI     +E +G+V G 
Sbjct: 270 LERRIGETATVLIAEGRLSVSADTLEGIAPGAAVDLFVRPDAVRI-----AEGEGLVSGT 324

Query: 316 VTDRTYKGMTLESVVEL 332
           V    Y+G  ++ +V++
Sbjct: 325 VATHVYQGSHVDVLVDV 341