Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas simiae WCS417

 Score =  199 bits (506), Expect = 6e-56
 Identities = 106/280 (37%), Positives = 164/280 (58%), Gaps = 13/280 (4%)

Query: 9   QNAIVTLIVGWLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTR 56
           ++A++ +   WL LF ++P  +++  SF   D A              ++      NY  
Sbjct: 18  RHAVIGIPFLWLFLFFMLPFFIVLKISFAEADVAIPPYTEIYTFVEQKLQLVLNLGNYAM 77

Query: 57  LLDP-LYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSL 115
           L D  LY    L S  MA  +TL+CL+IGYP AY +A   ++ +  ++ LI++P WT  L
Sbjct: 78  LGDDELYIAAYLGSLKMAFFSTLLCLLIGYPMAYAIASARKEMQTVLVLLIMMPTWTAIL 137

Query: 116 IRTYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIE 175
           IR Y    +L   G+LN  LMS+GLI+ PL+I+ T  AV IG+VY  LPFMILPLY+ + 
Sbjct: 138 IRVYAWMGILSNNGLLNGFLMSMGLINEPLQILNTNIAVYIGVVYSYLPFMILPLYANLV 197

Query: 176 KLDGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNL 235
           K D + +EAA DLG++ F +  ++ +PL+  GII GC+LV +P +G F I +LLGG + L
Sbjct: 198 KHDQSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETL 257

Query: 236 LIGNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYYRA 275
           +IG V+  +  N RDWP  +A ++ +   + + +  + R+
Sbjct: 258 MIGKVLWQEFFNNRDWPVASALAVVMLAILIVPIILFNRS 297