Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., Putrescine transport system permease protein PotH (TC 3.A.1.11.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  208 bits (529), Expect = 1e-58
 Identities = 106/282 (37%), Positives = 165/282 (58%), Gaps = 21/282 (7%)

Query: 12  IVTLIVGWLVLFVLIPNLMIIGTSFLTR-----------DEANLIKFAFTFENYTR---- 56
           ++ +  GWL+LF  +P L+++  SF+             D  + I  +  +ENY      
Sbjct: 13  VIGVPYGWLILFFFLPFLILLYISFVDMGGDISPFKPIWDPVSGI-LSLKYENYLAIFRT 71

Query: 57  -----LLDPLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFW 111
                L   LY    L S + A+   ++CL IGYPFAY +A+ P   RP +L ++++PFW
Sbjct: 72  EEGAPLFRTLYIDAYLRSIWYALCTAVLCLAIGYPFAYFIARSPASIRPALLLMVMLPFW 131

Query: 112 TNSLIRTYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLY 171
           T+ L+R Y  K +L  QG+LN+ LMS+GLI  P+ +++T  +++IG+ Y+ LPFMILPLY
Sbjct: 132 TSFLLRVYAWKGILADQGVLNRLLMSIGLISEPIPMLYTNVSMLIGMTYVYLPFMILPLY 191

Query: 172 SAIEKLDGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGG 231
           + + K+D   +EAA DLG + F+    + +PL+  GII G +LV +P +G F I  LLGG
Sbjct: 192 ANLVKMDFRLLEAAYDLGTSPFKAFWLITVPLSKAGIIAGFMLVFIPCVGEFVIPSLLGG 251

Query: 232 AKNLLIGNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYY 273
            +NL+IG V+  ++  A DWP   A ++ +   + I L  YY
Sbjct: 252 PENLMIGRVVWDEMFTANDWPRATALAVVMIALIVIPLALYY 293