Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., putrescine transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  198 bits (503), Expect = 1e-55
 Identities = 105/276 (38%), Positives = 158/276 (57%), Gaps = 13/276 (4%)

Query: 12  IVTLIVGWLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTRLLD 59
           ++ L   WL+L  L+P L++   S      A              +       N+ +L D
Sbjct: 32  VIALPYIWLILLFLLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTD 91

Query: 60  -PLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRT 118
            PLY    L S  +A ++T  CL+IGYP A+ VA      R  +L L+I+P WT+ LIR 
Sbjct: 92  DPLYFDAYLQSLQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRV 151

Query: 119 YGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLD 178
           Y    +L   G+LN  L+ LG+ID PL I+ T  AV IG+VY  +PFM+LP+Y+A+ ++D
Sbjct: 152 YAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRID 211

Query: 179 GTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIG 238
            + +EAA DLGA   +T   VI+PLT  GII G +LV +PA+G F I +LLGG  +++IG
Sbjct: 212 YSLVEAALDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIG 271

Query: 239 NVIKSQVLNARDWPFGAATSIALTLAMAIMLYAYYR 274
            V+  +  N RDWP  +A +I + L + + +  +++
Sbjct: 272 RVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHK 307