Pairwise Alignments

Query, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Putrescine transport system permease protein PotH from Azospirillum sp. SherDot2

 Score =  204 bits (519), Expect = 2e-57
 Identities = 110/283 (38%), Positives = 166/283 (58%), Gaps = 19/283 (6%)

Query: 9   QNAIVTLIVGWLVLFVLIPNLMIIGTSF----------------LTRDEANLIKFAF--T 50
           +  +V +   WL+LF ++P L++ G SF                LT ++A   K      
Sbjct: 20  RGVVVAIPYLWLLLFFMVPFLIVFGISFAESIIAQPPYSSLVDWLTDEDAGTSKLQILLN 79

Query: 51  FENYTRLL-DPLYGKVMLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVP 109
             NY RL  D LY    L+S  +A V TL+CL IGYP AY +AK     R  ++ L+I+P
Sbjct: 80  ISNYFRLGGDDLYILAYLNSLRIAAVTTLMCLAIGYPMAYAIAKADPARRGPLMMLVILP 139

Query: 110 FWTNSLIRTYGLKIVLGTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILP 169
           FWT+ LIR Y    +L   G+++  L  +G+   P+ I++++ AV IG+ Y  LPFM+LP
Sbjct: 140 FWTSFLIRIYAWIGILKGNGVISNLLEWVGITSGPVEILYSDWAVYIGMTYCYLPFMVLP 199

Query: 170 LYSAIEKLDGTYIEAARDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLL 229
           LYS +EK+D + +EAA DLG+  F++ + + LPL++PGII G LLV +PA+G F   +LL
Sbjct: 200 LYSTLEKMDPSLLEAAADLGSRPFKSFLSITLPLSLPGIIAGSLLVFIPAVGEFVTPELL 259

Query: 230 GGAKNLLIGNVIKSQVLNARDWPFGAATSIALTLAMAIMLYAY 272
           GG   L+IG V+ ++    RDWP  +A +IAL L + + +  +
Sbjct: 260 GGPDTLMIGRVLWNEFFANRDWPVASAVAIALLLVLVVPIMIF 302