Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) from Pseudomonas fluorescens GW456-L13

 Score =  194 bits (493), Expect = 2e-54
 Identities = 97/247 (39%), Positives = 158/247 (63%), Gaps = 1/247 (0%)

Query: 9   FMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAVF 68
           F  L YL+LY PI+VL+  SFN N+    W GF+  WY A   N +L QAA +S+ +AV 
Sbjct: 21  FSFLFYLYLYAPIVVLVVFSFNANQSATVWTGFSFDWYRAAFANQALRQAAGNSLLIAVC 80

Query: 69  SATAATLIGSLTAVALFR-YQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGAKLGF 127
           ++  AT I +L A+   R  +FKG ++  G + + ++ P+IV+ ++ LALF  +G  LG+
Sbjct: 81  ASMVATAIATLAALGTSRGAKFKGLQLSMGAIMLPLVLPEIVVGVATLALFSTIGLSLGY 140

Query: 128 FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPAVAAG 187
             L+IAH  FC+PF  + +  RLN  D+ + +A+ DL AG W   +K+ LPL  P + +G
Sbjct: 141 GNLIIAHTVFCIPFAFLPIRARLNDMDLSLEQASADLYAGPWRTFRKVTLPLLMPGIFSG 200

Query: 188 WLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVLVVAS 247
            +L+F +SLD+ +IS  V+      LP+ I+ ++++G++P+VNA++T++L VS++ V  S
Sbjct: 201 LMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVLFVTLS 260

Query: 248 QLLAREK 254
            LL ++K
Sbjct: 261 YLLGKKK 267