Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

 Score =  116 bits (291), Expect = 4e-31
 Identities = 62/247 (25%), Positives = 127/247 (51%), Gaps = 2/247 (0%)

Query: 7   FSFMSLVYLFLYL--PIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSIN 64
           F  +SL+ + +     +++LI +   E         ++ +WY AL++ + L  A W S+ 
Sbjct: 14  FGLLSLISVIVLAGPTLVILILSFTGEEALHFPPASYSLRWYAALIDANELQAALWVSLK 73

Query: 65  VAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGAK 124
           VAV S +A  ++G   A+ + R +    + +  +    ++ P +    + L LF ++G +
Sbjct: 74  VAVISVSACVVLGVAAALGIARSEGAVARGLETLFLSPLILPALAFGFAALMLFSILGMR 133

Query: 125 LGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPAV 184
               TL I HI  C+PFV+ T    L   D  +L+A++ LGA      + + LPL  P V
Sbjct: 134 PSTLTLAIGHIVVCVPFVLRTTLASLAQLDPALLDASRSLGASRLHTFRTVTLPLISPGV 193

Query: 185 AAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVLV 244
           A+G  ++F  S D+V +S F+     ++LP+ ++ +++  +     +   V+++ +++++
Sbjct: 194 ASGAFIAFMASFDNVPVSLFLQDARTQVLPIYLWDIIQNQLDSRAASACGVIIIATVLMM 253

Query: 245 VASQLLA 251
           V  + +A
Sbjct: 254 VLMERVA 260