Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

 Score =  224 bits (571), Expect = 1e-63
 Identities = 107/249 (42%), Positives = 175/249 (70%), Gaps = 3/249 (1%)

Query: 7   FSFMSLV--YLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSIN 64
           F+  S+V  + FLY+PII+L+  SFN ++    W GF+T+WY +L+ N+ L+ AAW ++ 
Sbjct: 8   FNVTSIVLGFAFLYIPIILLVIYSFNASRLVTVWAGFSTQWYWSLLENEQLIDAAWVTLR 67

Query: 65  VAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGA 123
           +A FS+  AT++G++ A+AL RY +F G+ + SGM++  ++ P+++  +SLL LF+ +  
Sbjct: 68  IAFFSSLVATVLGTMAALALTRYGRFGGRTLFSGMIYAPLVMPEVITGLSLLLLFVAVNF 127

Query: 124 KLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPA 183
             GF+T+L+AHITF + FV V V +RL  FD  + EAA DLG   +    KI LPL  PA
Sbjct: 128 DRGFWTVLLAHITFTMCFVAVVVQSRLVTFDRTLEEAALDLGCPPFQTFFKITLPLILPA 187

Query: 184 VAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVL 243
           V +G++L+FTLSLDD++I+SF TGP    LP++IYS V++G++PE+NA+ T+++ +  V+
Sbjct: 188 VVSGFMLAFTLSLDDLVIASFTTGPGATTLPMRIYSQVRLGVTPEINAVCTILIAIVTVV 247

Query: 244 VVASQLLAR 252
           V+ + ++ +
Sbjct: 248 VIVASIVTK 256