Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas simiae WCS417

 Score =  201 bits (512), Expect = 1e-56
 Identities = 103/249 (41%), Positives = 162/249 (65%), Gaps = 12/249 (4%)

Query: 6   RFSFMSLVY----LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61
           RFSF S +     LF+YLP+++L+  SFNE+K    WGG++ KWY  L++N  LM +   
Sbjct: 3   RFSFSSFMLVAGLLFIYLPMLILVIYSFNESKLVTVWGGWSIKWYVGLLDNTQLMGSVAR 62

Query: 62  SINVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLV 120
           S+ +A ++A AA  +G+L A  L R  QFKG+ +  G++   ++ P+++  +SLL LF+ 
Sbjct: 63  SLEIACYTAVAAVALGTLAAFVLTRISQFKGRTLFGGLVTAPLVMPEVITGLSLLLLFVA 122

Query: 121 MGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKK 174
           M   +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +   
Sbjct: 123 MAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFFL 182

Query: 175 IILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT 234
           I +P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A+
Sbjct: 183 ITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVAS 242

Query: 235 -VMLVVSLV 242
            ++L VSLV
Sbjct: 243 LILLAVSLV 251