Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., ABC-type spermidine/putrescine transport system, permease component II from Variovorax sp. SCN45

 Score =  149 bits (377), Expect = 4e-41
 Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 1/242 (0%)

Query: 5   IRFSFMSLVYLFLYLPIIVLIANSFN-ENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSI 63
           I  +F +LV +F+  P++V+   +F  EN   I    F+ +W+ A+  +   MQ+ W+S+
Sbjct: 7   IALAFNALVIVFMLAPLVVVCIVAFTPENTLTIPTTRFSLRWFEAVFAHPDFMQSFWNSL 66

Query: 64  NVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGA 123
            +A+ SAT ATL+     +A+ RY+F G+  ++G+    ++ P +V+ ++LL LF ++G 
Sbjct: 67  WLALSSATIATLLAVPAGMAITRYEFAGRDFLNGLFLSPLIVPHLVLGVALLRLFALVGG 126

Query: 124 KLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPA 183
              F  L++AH     P+ +  V   L GFD    +AA  LGA +  + ++I LP+  P 
Sbjct: 127 TGSFGWLVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATVFRRITLPMILPG 186

Query: 184 VAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVL 243
           V  GW+L+F  S D+V +S FVT P+   LP+++Y      I P + A++ +M+ V+   
Sbjct: 187 VTGGWMLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMVAVTACA 246

Query: 244 VV 245
           +V
Sbjct: 247 MV 248