Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., Polyamine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  142 bits (357), Expect = 9e-39
 Identities = 76/256 (29%), Positives = 147/256 (57%), Gaps = 4/256 (1%)

Query: 1   MGRSIR---FSFMSLVYLFLYLPIIVLIANSFNENKFGI-KWGGFTTKWYHALMNNDSLM 56
           MGR +R   +    ++  FL LP++ ++  SF  +++ +    G+T KWY    +N   M
Sbjct: 8   MGRPLRTGLYLTTGVIAAFLLLPVVFIVLLSFGSSQWLVFPPPGWTFKWYGQFFSNPEWM 67

Query: 57  QAAWHSINVAVFSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLA 116
            AA  S+ VAV +  AA L+G  +A AL R +F G++++ G+  + M+ P +++A+++ A
Sbjct: 68  DAALASLKVAVLTTIAAVLLGLPSAFALVRGRFPGRELLYGLFTMPMIVPLVIIAVAVYA 127

Query: 117 LFLVMGAKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKII 176
           LFL +G     F  +++H+   LPF ++++   L  FD  + +AA   GA     + K+ 
Sbjct: 128 LFLKLGYTGTLFAFVVSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAIFKVT 187

Query: 177 LPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVM 236
            P  +P + AG L +F +S D+V++S  +  P  + LP+K+++ ++  +SP +   +T++
Sbjct: 188 FPAIRPGMIAGGLFAFLVSWDEVVLSVMMASPDLQTLPVKMWTTLRQDLSPVIAVASTLL 247

Query: 237 LVVSLVLVVASQLLAR 252
           + +SL+++  +  L R
Sbjct: 248 IGLSLLVMFIAAALRR 263