Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., ABC transporter permease subunit from Paraburkholderia sabiae LMG 24235

 Score =  196 bits (498), Expect = 4e-55
 Identities = 101/258 (39%), Positives = 168/258 (65%), Gaps = 8/258 (3%)

Query: 3   RSIRFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHS 62
           R ++F  +++ + FLY+PI+ L+  SFNE++    W  F+T+WY AL+ ++ L+ AAW S
Sbjct: 5   RVLQFIALAIGFAFLYVPIVSLVVYSFNESQLVTVWTRFSTRWYSALLQDEELINAAWLS 64

Query: 63  INVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVM 121
           + VA+ +A A+ +IG+     L R  +F+G  + +GM+   ++ P+++  ISLL LF+ M
Sbjct: 65  LRVALLTAFASVIIGTWAGFVLARMGRFRGFTLYTGMINAPLVIPEVIQGISLLLLFIEM 124

Query: 122 GAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKI 175
           G  LG+      FT+ I H+  C+ +V + V +R+      + EAA DLGA    +   I
Sbjct: 125 GKWLGWPAGRGIFTIWIGHVMLCISYVAIIVQSRVRDLHPSLEEAALDLGATPLRVFFFI 184

Query: 176 ILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATV 235
            LPL   A+ AGWLLSFTLS+DD+++S+F++GP    LPL ++S V++G++PE+NALAT+
Sbjct: 185 TLPLISQALVAGWLLSFTLSIDDLVLSAFLSGPGSTTLPLVVFSRVRLGLNPEMNALATL 244

Query: 236 ML-VVSLVLVVASQLLAR 252
            + VV++ +V+A+  + R
Sbjct: 245 FIAVVTVGVVIANHFMQR 262