Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., ABC-type spermidine/putrescine transport system, permease component II from Enterobacter asburiae PDN3

 Score =  196 bits (498), Expect = 4e-55
 Identities = 98/255 (38%), Positives = 166/255 (65%), Gaps = 8/255 (3%)

Query: 6   RFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINV 65
           R + + + + FLY P+++L+  SFN +K    W G++T+WY  L ++D++M A   S+ +
Sbjct: 12  RIAILVVGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYSELFHDDAMMSAVGLSLTI 71

Query: 66  AVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMG-- 122
           A  +AT A+++G++ A+ + R+ +F+G    + M+   ++ PD++  ++LL LF+ +   
Sbjct: 72  AALAATMASVLGTIAALVMVRFGRFRGSNGFAFMITAPLVMPDVITGLALLLLFVALAHA 131

Query: 123 ----AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILP 178
               A  G  T+ +AH+TFC  +V V + +RL   D  + EAA DLGA    +   I LP
Sbjct: 132 IGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFIITLP 191

Query: 179 LAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVML- 237
           +  PAV +GWLL+FTLSLDD++I+SFV+GP    LP+ ++S V++G++PE+NALA+++L 
Sbjct: 192 MIMPAVISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALASIILG 251

Query: 238 VVSLVLVVASQLLAR 252
           VV +V  +A  L+AR
Sbjct: 252 VVGIVGFIAWYLMAR 266