Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., putrescine ABC transporter permease from Escherichia coli BL21

 Score =  200 bits (508), Expect = 3e-56
 Identities = 102/255 (40%), Positives = 164/255 (64%), Gaps = 8/255 (3%)

Query: 6   RFSFMSLVYLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINV 65
           R   + L + FLY P+++L+  SFN +K    W G++T+WY  L+ +D++M A   S+ +
Sbjct: 12  RIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELLRDDAMMSAVGLSLTI 71

Query: 66  AVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMG-- 122
           A  +ATAA ++G++ AV L R+ +F+G    + M+   ++ PD++  +SLL LF+ +   
Sbjct: 72  AACAATAAAILGTIAAVVLVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHA 131

Query: 123 ----AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILP 178
               A  G  T+ +AH+TFC  +V V + +RL   D  + EAA DLGA    +   I LP
Sbjct: 132 IGWPADRGMLTIWLAHVTFCTAYVTVVISSRLRELDSSIEEAAMDLGATPLKVFFVITLP 191

Query: 179 LAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVML- 237
           +  PA+ +GWLL+FTLSLDD++I+SFV+GP    LP+ ++S V++G++PE+NALAT++L 
Sbjct: 192 MIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILG 251

Query: 238 VVSLVLVVASQLLAR 252
            V +V  +A  L+AR
Sbjct: 252 AVGIVGFIAWYLMAR 266