Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

 Score =  218 bits (554), Expect = 1e-61
 Identities = 119/261 (45%), Positives = 173/261 (66%), Gaps = 12/261 (4%)

Query: 6   RFSFMSLV----YLFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61
           RF F+S      Y FLY+PI +L+  SFNE++    W GF+TKWY  L++ND+L+ AA+ 
Sbjct: 3   RFGFLSWALLFGYAFLYVPIALLVVFSFNESRLVTVWSGFSTKWYAELLHNDALLDAAFL 62

Query: 62  SINVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLV 120
           S  VA  SAT + L+G+   +AL R+ +F+G+ +  GM+   ++ P+++  +SLL LF+ 
Sbjct: 63  SFQVAAVSATLSVLLGTCAGLALTRFGRFRGRTLFGGMITAPLVMPEVITGLSLLLLFVA 122

Query: 121 MGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKK 174
           M   LG+       T+ IAH TF + +V V + +RL G D  + EAA DLGA    +   
Sbjct: 123 MEQWLGWPDGRGVTTITIAHTTFTMSYVAVVIQSRLAGMDGSLEEAAMDLGARPAKVFFV 182

Query: 175 IILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT 234
           I LPL  PA+ AGWLL+FTLSLDDV+++SFV+GP    LP+ I+S VK GISP++NALAT
Sbjct: 183 ITLPLIAPALVAGWLLAFTLSLDDVVVASFVSGPGSTTLPMVIFSSVKFGISPQINALAT 242

Query: 235 VM-LVVSLVLVVASQLLAREK 254
           +M LVV+  + VAS ++AR++
Sbjct: 243 LMVLVVATGIFVASIVMARQE 263