Pairwise Alignments

Query, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

 Score =  147 bits (372), Expect = 2e-40
 Identities = 71/238 (29%), Positives = 140/238 (58%), Gaps = 1/238 (0%)

Query: 9   FMSLVYLFLYLPIIVLIANSFN-ENKFGIKWGGFTTKWYHALMNNDSLMQAAWHSINVAV 67
           F +LV +F+  P+ ++   +F  EN   +   GF+ +W+ A+ ++   +Q+ W+S+ +AV
Sbjct: 11  FHALVVIFMLAPLAIVCLVAFTPENTLSLPTRGFSLRWFEAVFHHPDFVQSFWNSLWLAV 70

Query: 68  FSATAATLIGSLTAVALFRYQFKGKKVVSGMLFVVMMSPDIVMAISLLALFLVMGAKLGF 127
            SAT A  +    ++A+ RY+F G+  ++ +    ++ P +V+ +++L LF V+GA   F
Sbjct: 71  LSATLAVALAVPASLAITRYEFPGRGFLNALFLSPLIIPHLVLGVAMLRLFAVVGAAGSF 130

Query: 128 FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKKIILPLAKPAVAAG 187
             L+ AH+    P+V+  +   ++GFD  + +AA  LGA E  + +++ LP+  P V  G
Sbjct: 131 GWLVAAHMVIVTPYVMRLLIAAISGFDRSVEQAAFSLGASEATVFRRVTLPMILPGVTGG 190

Query: 188 WLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALATVMLVVSLVLVV 245
           WL++F  S D++ +S F+T P+   LP+++Y      I P + A++ +++ ++ V V+
Sbjct: 191 WLIAFINSFDELTMSIFITSPSTVTLPVRMYMYATESIDPMMAAVSALIIGITAVAVL 248