Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Pseudomonas fluorescens GW456-L13

 Score =  166 bits (420), Expect = 8e-46
 Identities = 112/314 (35%), Positives = 166/314 (52%), Gaps = 14/314 (4%)

Query: 1   MKKLATLLAGSA--CALSLLSGTA-AAEDKELVFMNWGPYINSGILEQFTKETGIKVIYS 57
           +K +   +AG A  C  +  + +A AAE KEL F NW  Y    +L +F KETGIKV   
Sbjct: 5   VKSMRFAVAGLALSCFTAFTAFSAQAAEPKELFFYNWTDYYPVELLAKFEKETGIKVTMD 64

Query: 58  TYESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKP 117
            Y+SNETL AKL+     YD++VPS   +  + ++ +L +ID S L NF+ +   + D  
Sbjct: 65  GYDSNETLLAKLQAGGAAYDVIVPSQSIMRTLINQDLLLEIDASALPNFQYVKPAFRDPS 124

Query: 118 YDPNNDYSIPHVVAITGLAVNTDMYDPNDF-QSWGDLWKP--ELKGQLMLMDDTREVFHI 174
           +DP   +S P++   TG + ++          SW + ++P  EL+GQL  +D +  V + 
Sbjct: 125 FDPGRKFSAPYLWGTTGFSYDSARVPGGKLDDSWKEFFEPRKELQGQLAALDTSSSVINA 184

Query: 175 ALRKLGY---SGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGS 231
           A   L     S N  D K+I E    LQK  P + +++SDN      SGEV +   WNGS
Sbjct: 185 ASHYLNVDECSENPQDAKRILEL---LQKQKPFLKMYSSDNTVDRMASGEVIMMQNWNGS 241

Query: 232 AAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTG 291
            A A  +   IK V+PKEG   + DNFA+   A +   A   ID++++PE A  +S    
Sbjct: 242 TARATLQKSTIKYVYPKEGLAMFQDNFAVPKSAPHPGNAKIFIDWMMKPENAAAVSNAIA 301

Query: 292 YLTGVKASNDKFQD 305
           Y  G++  +DK  D
Sbjct: 302 YANGIQ--SDKLID 313