Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Putrescine-binding periplasmic protein SpuD from Xanthobacter sp. DMC5

 Score =  173 bits (438), Expect = 7e-48
 Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 26/342 (7%)

Query: 4   LATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNE 63
           L   LA    A   L+G A A+DK +   NW  YI+  +LE FTKETGIKV Y  ++SNE
Sbjct: 2   LRQTLAAVVVATLGLTGVATAQDKVVNVFNWSDYIDPTVLEDFTKETGIKVRYDVFDSNE 61

Query: 64  TLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPN 121
            L  KL     GYD+VVPS  F+ +    G+   +DKSKL N +        +   YDP 
Sbjct: 62  VLETKLLAGKTGYDVVVPSGSFLQRQIKAGVFIPLDKSKLPNLQYAWPEVTQRLAVYDPG 121

Query: 122 NDYSIPHVVAITGLAVNTDMYDPN----DFQSWGDLWKPELKGQL-----MLMDDTREVF 172
           N +++ ++   TG+  N D            +W  ++KPE+  +L      ++D   EV 
Sbjct: 122 NAHAVNYMWGTTGIGYNVDKVKERLGDIPLNTWDIIFKPEILSKLKDCGVYVLDGPEEVI 181

Query: 173 HIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNG-- 230
             A++ LG   NS + + I +A   L  + P +  F+S         G++ + + W+G  
Sbjct: 182 PTAMKYLGLDPNSKNPEDIAKAGELLMTIRPYIKKFDSSGYINALARGDICIALGWSGDV 241

Query: 231 ---------SAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPE 281
                    +A   +K+ + +  V PKEG + W DNFAI   AKN+D A   I+++++PE
Sbjct: 242 YQAKTRAQEAAKKTKKKPVNVDYVLPKEGALMWFDNFAIPKDAKNIDNALAFINYMMKPE 301

Query: 282 IAEQISRDTGYLTGVKAS----NDKFQDVAPLFPSQEDLDRV 319
           +A + S    Y  G  AS    + +  D   ++P++E  DR+
Sbjct: 302 VAAKNSNFISYANGNLASQKFIDKEIMDNPSIYPTKEVFDRL 343