Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  161 bits (407), Expect = 3e-44
 Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 20/299 (6%)

Query: 13  CALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETG-IKVIYSTYESNETLYAKLKT 71
           CA +++SG A AE+K L   NW  YI    LE F  +   IK++Y  +++NE L AKL T
Sbjct: 10  CA-AVISGMAHAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFDTNEALEAKLLT 68

Query: 72  HNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNY--LDKPYDPNNDYSIPHV 129
            N GYD+VVPS  F+AK  + G+ Q +D+S+L N+K+LD     L +  DP N +++P++
Sbjct: 69  GNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPGNKFAVPYM 128

Query: 130 VAITGLAVNTDMYDP-----NDFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKL 179
                +  N D             SW  ++K E   +L      L+D   E+  +AL+ L
Sbjct: 129 YGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEILPLALQHL 188

Query: 180 GYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAAAA---- 235
           G   NS++ K   +A A L K+ P V  F+S    A   +G++ + + ++GS + A    
Sbjct: 189 GLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVGYSGSFSQAANRA 248

Query: 236 --QKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY 292
              K G+ + +  PKEG   W D  AI  GAKN   A+  I++LL+P++   IS   GY
Sbjct: 249 RDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAPISDFVGY 307