Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  150 bits (380), Expect = 4e-41
 Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 21/308 (6%)

Query: 33  NWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDE 92
           NW  YI    L  F  +TGIK IY  ++SNETL  KL     GYD+VVPS +F+A+    
Sbjct: 30  NWTDYIGETTLADFQAKTGIKPIYDVFDSNETLEGKLLAGRTGYDVVVPSNHFLARQVKA 89

Query: 93  GMLQKIDKSKLSNFKNLDSNYLD--KPYDPNNDYSIPHVVAITGLAVNTD----MYDPND 146
           G   K+D+++L NFKNLD   L   +  DP N +S+P++    G+  N D    +   + 
Sbjct: 90  GAFLKLDRAQLPNFKNLDPKLLKLLEKNDPGNAHSVPYLWGTNGIGYNVDKVKEVLGIDA 149

Query: 147 FQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKLGYSGNSTDDKQIDEAYAELQKL 201
             SW  L++PE   +L       +D   E+F   L  +G    S + +   +A A+L  L
Sbjct: 150 IDSWAVLFEPENIKKLNQCGVAFLDSADELFPAILNYMGKDPRSENPEDYKQAEAKLLTL 209

Query: 202 MPNVLVFNSDNPAAPYLSGEVGLGMLWNG------SAAAAQKEGLPIKLVFPKEGGIGWV 255
            P +  F+S    +   +G + +   ++G      + A   K G+ I    PKEG   W 
Sbjct: 210 RPYITYFHSSKYISDLANGNICVAFGYSGDVFQAANRAKEAKNGVKIAYSIPKEGSNLWF 269

Query: 256 DNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTGVKAS----NDKFQDVAPLFP 311
           D  AI + A +   AH  I++LL P++  ++S   GY     A+    + +  +   ++P
Sbjct: 270 DLLAIPADASHPKEAHAFINYLLDPQVIAKVSASVGYANANPAAKAFMDPELVNNPEVYP 329

Query: 312 SQEDLDRV 319
           SQ+ LD++
Sbjct: 330 SQDVLDKL 337