Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  162 bits (409), Expect = 2e-44
 Identities = 110/343 (32%), Positives = 175/343 (51%), Gaps = 25/343 (7%)

Query: 1   MKKLATLLAGSACALSLLSGT--AAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYST 58
           M +L  LLA    A +L +G   A AE + L   NW  YI    L  F K++G+K++Y  
Sbjct: 1   MVRLKRLLAPFIAA-TLFAGALHAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDI 59

Query: 59  YESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNY--LDK 116
           +++NE L AKL T N GYD+VVPS  F+AK  + G+ Q +D+SKL N+++LD     L +
Sbjct: 60  FDTNEALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIE 119

Query: 117 PYDPNNDYSIPH-----VVAITGLAVNTDMYDPNDFQSWGDLWKPELKGQL-----MLMD 166
             DP N +++P+     ++      V   + D     SW  ++K E   +L      L+D
Sbjct: 120 ANDPGNKFAVPYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLD 179

Query: 167 DTREVFHIALRKLGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGM 226
              E+  +AL+ LG   NS       +A   + K+ P++  F+S    A   +G++ + +
Sbjct: 180 SPSEILPLALQYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAV 239

Query: 227 LWNGSAAAA------QKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRP 280
            ++GS + A         G+ + +  PKEG   W D  AI  GA N + AH  I++LLRP
Sbjct: 240 GYSGSFSQAANRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRP 299

Query: 281 EIAEQISRDTGYLTGVKASNDK----FQDVAPLFPSQEDLDRV 319
           E+   IS   GY    K + DK     ++   L+P+ E + ++
Sbjct: 300 EVIAPISDFVGYPNPNKDATDKVNPTIRNNPNLYPTAEAMAKL 342