Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Spermidine-binding periplasmic protein SpuE from Pseudomonas sp. DMC3

 Score =  170 bits (430), Expect = 6e-47
 Identities = 109/330 (33%), Positives = 165/330 (50%), Gaps = 25/330 (7%)

Query: 11  SACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLK 70
           +A  L++  G  AA    +   NW  YI    L  F KETGIK +Y  ++SNETL  KL 
Sbjct: 13  AAAGLTIAVGAQAAGTVHIY--NWSDYIGESTLADFEKETGIKPVYDVFDSNETLEGKLL 70

Query: 71  THNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYSIPH 128
               GYD+VVPS +F+ K    G  QK+DK++L N+ NLD   L +    DP N Y++P+
Sbjct: 71  AGRTGYDVVVPSNHFLGKQIKAGAFQKLDKAQLPNYSNLDPVLLKRLEQNDPGNLYAVPY 130

Query: 129 VVAITGLAVNTD----MYDPNDFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKL 179
           +    G+  N D    +   +   SW  L++PE   +L       +D   E+    L  L
Sbjct: 131 LWGTNGIGYNVDKVKAVLGIDKIDSWAVLFEPENIKKLHSCGVAFLDSADEMMPTMLNYL 190

Query: 180 GYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNG------SAA 233
           G + NST+ K  ++A A+L  + P V  F+S        +G++ + + ++G      + A
Sbjct: 191 GLNANSTNTKDYEKATAKLLAVRPYVTYFHSSKYIGDLANGDICVAIGFSGDIFQAKNRA 250

Query: 234 AAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYL 293
              K+G+ I    PKEGG  W D  AI   + NV  AH  I++LL+PE+  Q+S   GY 
Sbjct: 251 EEAKKGVNIAYSIPKEGGALWFDMLAIPKDSSNVKEAHAFINYLLKPEVIAQVSDYVGY- 309

Query: 294 TGVKASNDKFQDVA-----PLFPSQEDLDR 318
                 +DK  + +      ++P Q  LD+
Sbjct: 310 ANPNPGSDKLMEQSIRTDEAVYPPQAVLDK 339