Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Putrescine-binding periplasmic protein SpuD from Pseudomonas sp. DMC3

 Score =  154 bits (390), Expect = 3e-42
 Identities = 101/289 (34%), Positives = 145/289 (50%), Gaps = 18/289 (6%)

Query: 22  AAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLKTHNQGYDLVVP 81
           A A DK L   NW  YI    +++F  ETGI+V Y  ++SNETL A+L     GYD+VVP
Sbjct: 21  AQANDKVLRVYNWSDYIAPDTVKKFEDETGIRVTYDVFDSNETLEARLLAGKSGYDIVVP 80

Query: 82  STYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYSIPHVVAITGLAVN- 138
           S  F+AK    G+ Q +DKSKL N+KNL+   L      DP+N ++ P++    G+  N 
Sbjct: 81  SNSFLAKQIKAGVYQPLDKSKLPNWKNLNPVLLKNAAASDPDNAHAFPYMWGSIGIGFNP 140

Query: 139 ---TDMYDPN-DFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKLGYSGNSTDDK 189
               ++   N    SW  L+KPE   +L       +D   E+   AL  LGY  N  D  
Sbjct: 141 AKVKEVLGANAPTNSWDLLFKPENAEKLKACGISFLDSPTEMLPAALHYLGYPVNDKDKA 200

Query: 190 QIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLP------IK 243
            I EA A   K+ P V  F+S    +   +G + + + ++G    A+   +       I 
Sbjct: 201 HIAEAEALFMKIRPYVAYFHSSKYISDLANGNICVAVGYSGDVLQAKARAVESGNNVVID 260

Query: 244 LVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY 292
              PKEG   + D  AI   A NVD A+  +DFL+RP+I  +++   GY
Sbjct: 261 YSIPKEGAGSFYDMVAIPRDAANVDNAYLFMDFLMRPDIIAEVTNSIGY 309