Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  148 bits (374), Expect = 2e-40
 Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 18/312 (5%)

Query: 12  ACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLKT 71
           A A +  +G    ++K L   NW  YI   ++  F KE G+KV Y T+E+NE L+AKL  
Sbjct: 35  AAAPAAPAGPVLDDEKVLNVYNWPDYITETLIADFEKEYGVKVNYDTFENNEALHAKLVA 94

Query: 72  HNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYSIPHV 129
            N GYD+V+P+  F  K  D G+ Q IDKSKL N+ NLD++++ K    DP+N + +P  
Sbjct: 95  GNSGYDIVIPTAGFAKKQIDGGLYQPIDKSKLKNYGNLDTDFMAKIAGVDPDNKHLVPWA 154

Query: 130 VAITGLAVNTDMYD------PNDFQSWGDLWKPELKGQL-----MLMDDTREVFHIALRK 178
              T + +N    +      P    +W  ++KPE   +L       +D   E+  +AL  
Sbjct: 155 WGFTTVGINKQKVEKALGGMPMPENAWDLVFKPEYSSKLKSCGIAYLDSPSEILPVALHY 214

Query: 179 LGYSGNSTDDKQIDEAYAELQKLMPNVLVFNS---DNPAAPYLSGEVGLGMLWNGSAAAA 235
           +G    S + +    A   L+K+  +V +F+S   D+ A       +G     N +A   
Sbjct: 215 VGKPAYSENPEDFKLAGEMLKKVRKDVRLFSSTMIDDIAGGKACAFIGWSGDINIAAGRV 274

Query: 236 QKEGLPIKLV--FPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYL 293
           ++ G   ++V   P  GG+ ++D  AI   AK+V+ AH  +DF LR   A  ++ +  Y 
Sbjct: 275 KETGGKDEIVPLLPTGGGLVFIDTMAIPKDAKHVNNAHVFMDFYLRAANAAAMANELNYP 334

Query: 294 TGVKASNDKFQD 305
           TG KA+    +D
Sbjct: 335 TGNKAALADIKD 346