Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  171 bits (434), Expect = 2e-47
 Identities = 113/315 (35%), Positives = 160/315 (50%), Gaps = 21/315 (6%)

Query: 2   KKLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYES 61
           K L+ L+AG+   +S+  GT AAE K L   NW  YI    +  F KETGI VIY  ++S
Sbjct: 8   KWLSGLVAGALMVVSV--GTLAAEQKTLHIYNWSDYIAPDTVANFEKETGINVIYDVFDS 65

Query: 62  NETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYD 119
           NE L  KL   + G+DLVVPS  F+ +    G+ Q +DKSKL  +KNLD   L     +D
Sbjct: 66  NEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPGWKNLDPELLKLVAKHD 125

Query: 120 PNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQL-----MLMDDTR 169
           P+N Y++P++ A TG+  N D     + D     SW  + KPE   +L       +D   
Sbjct: 126 PDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSWDLVLKPENLEKLKSCGVSFLDAPE 185

Query: 170 EVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLW 228
           E+F   L  LG   NS+  D     A   L KL PN+  F+S        +G+  + + W
Sbjct: 186 EIFATVLNYLGKDPNSSKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDTCVAIGW 245

Query: 229 NG------SAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEI 282
            G      + A   K G+ I    PKEG + + D FA+ + AKN D A++ +++LLRP++
Sbjct: 246 AGDVWQAANRAKEAKNGVNISFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDV 305

Query: 283 AEQISRDTGYLTGVK 297
              IS    Y    K
Sbjct: 306 IAHISDHVFYANANK 320