Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  403 bits (1036), Expect = e-117
 Identities = 200/349 (57%), Positives = 256/349 (73%), Gaps = 7/349 (2%)

Query: 1   MKKLAT-LLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTY 59
           MKK +  LLA  A AL + S   A+++  L F NW  Y+  G+LEQFTKETGIKVIYSTY
Sbjct: 1   MKKWSRHLLAAGALALGM-SAAHASDNDTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTY 59

Query: 60  ESNETLYAKLKTHNQG-YDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPY 118
           ESNET+YAKLKT+  G YDLVVPSTY+V KMR EGM+QKIDKSKL+NF NLD   L+KP+
Sbjct: 60  ESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFHNLDPEMLNKPF 119

Query: 119 DPNNDYSIPHVVAITGLAVNTDMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRK 178
           DPNNDYS+P++   T + VN+D  DP    SW DLWKPE K  L+L DD REVF +ALRK
Sbjct: 120 DPNNDYSVPYIWGATAIGVNSDAIDPKTITSWADLWKPEYKNSLLLTDDAREVFQMALRK 179

Query: 179 LGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKE 238
           LGYSGN+TD K+I+ AY EL+KLMPNV  FNSDNPA PY+ GEV LGM+WNGSA  A++ 
Sbjct: 180 LGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAFVARQA 239

Query: 239 GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY----LT 294
           G P+++V+PKEGGI W+D+ AI + AKN + A K+I+FLLRP++A++++   GY    L 
Sbjct: 240 GTPLEVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKEVAETIGYPTPNLA 299

Query: 295 GVKASNDKFQDVAPLFPSQEDLDRVEWQSAVGDKTVKYEEYFMKLKAGQ 343
             K  + +  +   L+P  + + + EWQ+ VGD +  YEEY+ KLKAG+
Sbjct: 300 ARKLLSPEVANDKSLYPDAQTISKGEWQNDVGDASAIYEEYYQKLKAGR 348