Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) from Escherichia coli BW25113

 Score =  402 bits (1033), Expect = e-117
 Identities = 204/349 (58%), Positives = 253/349 (72%), Gaps = 7/349 (2%)

Query: 1   MKKLAT-LLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTY 59
           MKK +  LLA  A AL + S   A ++  L F NW  Y+  G+LEQFTKETGIKVIYSTY
Sbjct: 1   MKKWSRHLLAAGALALGM-SAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTY 59

Query: 60  ESNETLYAKLKTHNQG-YDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPY 118
           ESNET+YAKLKT+  G YDLVVPSTY+V KMR EGM+QKIDKSKL+NF NLD + L+KP+
Sbjct: 60  ESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPF 119

Query: 119 DPNNDYSIPHVVAITGLAVNTDMYDPNDFQSWGDLWKPELKGQLMLMDDTREVFHIALRK 178
           DPNNDYSIP++   T + VN D  DP    SW DLWKPE KG L+L DD REVF +ALRK
Sbjct: 120 DPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRK 179

Query: 179 LGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKE 238
           LGYSGN+TD K+I+ AY EL+KLMPNV  FNSDNPA PY+ GEV LGM+WNGSA  A++ 
Sbjct: 180 LGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQA 239

Query: 239 GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY----LT 294
           G PI +V+PKEGGI W+D+ AI + AKN + A K+I+FLLRP++A+Q++   GY    L 
Sbjct: 240 GTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLA 299

Query: 295 GVKASNDKFQDVAPLFPSQEDLDRVEWQSAVGDKTVKYEEYFMKLKAGQ 343
             K  + +  +   L+P  E +   EWQ+ VG  +  YEEY+ KLKAG+
Sbjct: 300 ARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAASSIYEEYYQKLKAGR 348