Pairwise Alignments

Query, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  176 bits (447), Expect = 6e-49
 Identities = 114/317 (35%), Positives = 165/317 (52%), Gaps = 21/317 (6%)

Query: 2   KKLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYES 61
           K L+ L+AG+  A+S+  GT AAE K L   NW  YI    +  F KETGIKV+Y  ++S
Sbjct: 7   KWLSGLVAGALMAVSV--GTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDS 64

Query: 62  NETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLD--KPYD 119
           NE L  KL   + G+DLVVPS  F+ +    G+ Q +DKSKL  +KNLD   L     +D
Sbjct: 65  NEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHD 124

Query: 120 PNNDYSIPHVVAITGLAVNTD-----MYDPNDFQSWGDLWKPELKGQL-----MLMDDTR 169
           P+N +++P++ A TG+  N D     + +     SW  + KPE   +L       +D   
Sbjct: 125 PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPE 184

Query: 170 EVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLW 228
           EVF   L  LG   NST  D     A   L KL PN+  F+S        +G++ + + W
Sbjct: 185 EVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGW 244

Query: 229 NG------SAAAAQKEGLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEI 282
            G      + A   K G+ +    PKEG + + D FA+ + AKN D A++ +++LLRP++
Sbjct: 245 AGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDV 304

Query: 283 AEQISRDTGYLTGVKAS 299
              IS    Y    KA+
Sbjct: 305 VAHISDHVFYANANKAA 321