Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Putrescine-binding periplasmic protein SpuD from Xanthobacter sp. DMC5

 Score =  197 bits (501), Expect = 4e-55
 Identities = 116/341 (34%), Positives = 181/341 (53%), Gaps = 22/341 (6%)

Query: 1   MKNKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESN 60
           M  +  A+ + A    T  A A+D+ +  +NWS+YI   VLEDFTKETGIKV Y  ++SN
Sbjct: 1   MLRQTLAAVVVATLGLTGVATAQDKVVNVFNWSDYIDPTVLEDFTKETGIKVRYDVFDSN 60

Query: 61  ESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDP 118
           E +  KL     GYD+VVPS  F+ +  K G+   +D SKL + +   P    +   +DP
Sbjct: 61  EVLETKLLAGKTGYDVVVPSGSFLQRQIKAGVFIPLDKSKLPNLQYAWPEVTQRLAVYDP 120

Query: 119 GNKFSIPYIWGATGIGINTDMLDKK----SLKNWGDLWDAKWAGQL-----MLMDDAREV 169
           GN  ++ Y+WG TGIG N D + ++     L  W  ++  +   +L      ++D   EV
Sbjct: 121 GNAHAVNYMWGTTGIGYNVDKVKERLGDIPLNTWDIIFKPEILSKLKDCGVYVLDGPEEV 180

Query: 170 FHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS 229
              A+  LG  PN+ NP++I  A   L  + P +  F+S    N    G++ + + W+G 
Sbjct: 181 IPTAMKYLGLDPNSKNPEDIAKAGELLMTIRPYIKKFDSSGYINALARGDICIALGWSGD 240

Query: 230 AYMAR---QEGA------PIQI--IWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRP 278
            Y A+   QE A      P+ +  + P++G + W D+ +IP  AKNI+ A   I+++++P
Sbjct: 241 VYQAKTRAQEAAKKTKKKPVNVDYVLPKEGALMWFDNFAIPKDAKNIDNALAFINYMMKP 300

Query: 279 ENAAKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
           E AAK +  I Y      +   + KE  ++PSIYP + V D
Sbjct: 301 EVAAKNSNFISYANGNLASQKFIDKEIMDNPSIYPTKEVFD 341