Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  192 bits (489), Expect = 9e-54
 Identities = 110/333 (33%), Positives = 177/333 (53%), Gaps = 20/333 (6%)

Query: 4   KLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESM 63
           +LF  AL AA    ++A      +  YNW++YI    L DF  +TGIK IY  ++SNE++
Sbjct: 6   QLFPLALVAAF---SSASQAAPTVSVYNWTDYIGETTLADFQAKTGIKPIYDVFDSNETL 62

Query: 64  YAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNK 121
             KL     GYD+VVPS +F+++  K G   ++D ++L +FK+LDP  L   +  DPGN 
Sbjct: 63  EGKLLAGRTGYDVVVPSNHFLARQVKAGAFLKLDRAQLPNFKNLDPKLLKLLEKNDPGNA 122

Query: 122 FSIPYIWGATGIGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHI 172
            S+PY+WG  GIG N D    +L   ++ +W  L++ +   +L       +D A E+F  
Sbjct: 123 HSVPYLWGTNGIGYNVDKVKEVLGIDAIDSWAVLFEPENIKKLNQCGVAFLDSADELFPA 182

Query: 173 ALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYM 232
            L+ +G  P + NP++ K A  +L  L P +  F+S    +    G + +   ++G  + 
Sbjct: 183 ILNYMGKDPRSENPEDYKQAEAKLLTLRPYITYFHSSKYISDLANGNICVAFGYSGDVFQ 242

Query: 233 A------RQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIAL 286
           A       + G  I    P++G+  W D ++IPA A + + AH  I++LL P+  AK++ 
Sbjct: 243 AANRAKEAKNGVKIAYSIPKEGSNLWFDLLAIPADASHPKEAHAFINYLLDPQVIAKVSA 302

Query: 287 EIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
            +GY      A   +  E  N+P +YP Q V+D
Sbjct: 303 SVGYANANPAAKAFMDPELVNNPEVYPSQDVLD 335