Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  193 bits (491), Expect = 5e-54
 Identities = 112/325 (34%), Positives = 182/325 (56%), Gaps = 21/325 (6%)

Query: 7   ASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAK 66
           A+ L A AL   +A A+ + L  YNW +YI  + L  F K++G+K++Y  +++NE++ AK
Sbjct: 13  AATLFAGAL---HAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIFDTNEALEAK 69

Query: 67  LKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKFSI 124
           L T  +GYD+VVPS  F++K  + G+ Q +D SKL +++ LDP  +   +  DPGNKF++
Sbjct: 70  LLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIEANDPGNKFAV 129

Query: 125 PYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIAL 174
           PY++G   IG N   +     D   + +W  ++  +   +L      L+D   E+  +AL
Sbjct: 130 PYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLDSPSEILPLAL 189

Query: 175 SKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS----A 230
             LG  PN+  P + K A   + K+ P++  F+S         G++ + + ++GS    A
Sbjct: 190 QYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAVGYSGSFSQAA 249

Query: 231 YMARQ--EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEI 288
             AR+   G  + +  P++G   W D ++IP GA N E AH  I++LLRPE  A I+  +
Sbjct: 250 NRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRPEVIAPISDFV 309

Query: 289 GYPTPVKTAHDLLPKEFANDPSIYP 313
           GYP P K A D +     N+P++YP
Sbjct: 310 GYPNPNKDATDKVNPTIRNNPNLYP 334