Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  199 bits (507), Expect = 7e-56
 Identities = 110/337 (32%), Positives = 183/337 (54%), Gaps = 18/337 (5%)

Query: 1   MKNKLFASALCAAALFTTNAMAKDQE-LYFYNWSEYIPSEVLEDFTKETGIKVIYSTYES 59
           M   +F  AL A A  T     +    ++FYNWS+YI    L DF K TGIK +   ++S
Sbjct: 1   MSISVFRKALMAGAGLTLACSVQAAPTVHFYNWSDYIGPTTLADFEKATGIKPVQDVFDS 60

Query: 60  NESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFD 117
           NE++  KL     GYD+VVPS +F+ K  K G  Q++D + L ++ +LDP  + +    D
Sbjct: 61  NETLEGKLLAGNTGYDVVVPSNHFLGKQIKAGAFQKLDKNLLPNYSNLDPALMKRLEKND 120

Query: 118 PGNKFSIPYIWGATGIGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDARE 168
           PGN++++PY+WG  GIG N D     L   ++ +W  L++ +   +L       +D A E
Sbjct: 121 PGNQYAVPYLWGTNGIGYNVDKVKAALGVDTIDSWAVLFEPENMKKLSKCGVAFLDSADE 180

Query: 169 VFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNG 228
           +    L+ +G +PN+T+PK+   A ++L  + P V  F+S         G++ +   ++G
Sbjct: 181 MLPAVLNYMGLNPNSTDPKDYAKAEQKLLAVRPYVTYFHSSKYITDLANGDICVAAGFSG 240

Query: 229 SAYMAR------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAA 282
             + A+      ++G  +    P++G   W D ++IP  AKN++ AH  I++LL+PE  A
Sbjct: 241 DVFQAKARAEEAKKGVNLAYAIPKEGGNLWFDVLAIPKDAKNVKEAHAFINYLLKPEVIA 300

Query: 283 KIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319
           +++  +GY  P   A  L+ +    D ++YPPQ V+D
Sbjct: 301 QVSDYVGYANPNPKAGALMDQAVRTDAAVYPPQEVLD 337