Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  162 bits (409), Expect = 2e-44
 Identities = 98/315 (31%), Positives = 164/315 (52%), Gaps = 18/315 (5%)

Query: 22  AKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQGAGYDLVVPST 81
           A+   ++ YNW +YI    ++DF KE G+ V+Y  ++++E M +KL    +GYD+VV S 
Sbjct: 27  AQKPSVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRSGYDVVVASA 86

Query: 82  YFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKFSIPYIWGATGIGINTDM 139
             +  + K G+L+ +D SKL ++  LDP+ L K    DPGN ++ PY+WG TGIG + D 
Sbjct: 87  DLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWGTTGIGYDADK 146

Query: 140 LDK-----KSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIALSKLGYSPNTTNPKEI 189
           +         + +W  ++  +   +L      ++D   EV  IAL  LG   N+ NP + 
Sbjct: 147 VKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGLPYNSHNPDDY 206

Query: 190 KAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMARQ----EGAPIQIIW- 244
           K A   L KL P++  F+S    +    G V + + W G    A++     G    +++ 
Sbjct: 207 KKAQELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASELAGNHRNLVYS 266

Query: 245 -PEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTAHDLLPK 303
            P +G   W++S+     A N E     I+++LRPE  A+ +  + YP   K A  L+ K
Sbjct: 267 IPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNANKDATALVEK 326

Query: 304 EFANDPSIYPPQSVI 318
           +  ++P +YP + V+
Sbjct: 327 KIRDNPGVYPSKDVL 341