Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  169 bits (427), Expect = 1e-46
 Identities = 101/318 (31%), Positives = 162/318 (50%), Gaps = 17/318 (5%)

Query: 13  AALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQGA 72
           A+L     +     L  YNW++YI    L DF K TGIKVIY T++  E++  KL T  +
Sbjct: 17  ASLAQAAEVGSGNTLRLYNWTDYIGETTLADFEKATGIKVIYDTFDGYETVQTKLLTGRS 76

Query: 73  GYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKFSIPYIWGA 130
           GYDLV+ +   V  +   G+ Q +D  +L  + +LD   +N  + +DPG K+S PY WG+
Sbjct: 77  GYDLVMLNASLVPPLISAGVFQALDKQQLPSWHNLDQQVVNDLQGYDPGLKYSAPYTWGS 136

Query: 131 TGIGINTDMLDKK----SLKNWGDLWDAKWAGQ-----LMLMDDAREVFHIALSKLGYSP 181
           +G+  N D +  +     + +   L+D K   +     + LMD   EV  +AL  LG  P
Sbjct: 137 SGVTYNVDKITARMPDAPIGSLAMLFDPKIVSRFADCGVTLMDAPTEVIPLALQYLGKDP 196

Query: 182 NTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMAR------Q 235
            + +P ++KAA + L  + P +  F+S         G+V L + W+G    A+      +
Sbjct: 197 RSASPADLKAAEQLLLGIRPYIRKFDSVNYLTSLPNGDVCLALTWSGDYATAQARAVEAK 256

Query: 236 EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVK 295
           +   +    P +G++ W D++ IP  A +   AH+ I+FLL+P+  AK+   I Y     
Sbjct: 257 KDIKLSFFIPREGSLIWFDNLYIPKDAPHAANAHRFIEFLLQPQTMAKVTDYIHYANSNA 316

Query: 296 TAHDLLPKEFANDPSIYP 313
            A  L+  +   DP+IYP
Sbjct: 317 AATALVRDDIRQDPAIYP 334