Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  183 bits (464), Expect = 7e-51
 Identities = 104/322 (32%), Positives = 164/322 (50%), Gaps = 18/322 (5%)

Query: 15  LFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQGAGY 74
           LF T   A    +  YNW++YI    L DF   +GIKV+Y  ++SNE++  KL     GY
Sbjct: 15  LFATTTQAAPT-VSVYNWTDYIGDTTLADFQASSGIKVVYDVFDSNETLEGKLLAGRTGY 73

Query: 75  DLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKFSIPYIWGATG 132
           D+VVPS +F+++  + G    +D SKL +++ LDP  L   +  DPGN++++PY+WG  G
Sbjct: 74  DVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWGTNG 133

Query: 133 IGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIALSKLGYSPNT 183
           IG N D     L    + +W  L++ +   +L       MD   E+F   L+ LG  P +
Sbjct: 134 IGYNVDKVKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLNYLGMDPRS 193

Query: 184 TNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMA------RQEG 237
             P +   A   L +L P +  F+S    +    G+V +   ++G  + A       + G
Sbjct: 194 EKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSGDVFQAANRAVEAKNG 253

Query: 238 APIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTA 297
             +    P++G+  W D ++IP  A N E A   I++LL P+  AK++  +GY      A
Sbjct: 254 VKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVGYANANPDA 313

Query: 298 HDLLPKEFANDPSIYPPQSVID 319
              +     N+P IYPPQ V+D
Sbjct: 314 KAYMDASLVNNPEIYPPQEVLD 335